I Want To Parse Blast, How Do I Do This?

1.	I Want To Parse Blast, How Do I Do This?
Answer» As of VERSION 1.1, BIOPERL only supports one approach - the Bio::SearchIO interface. There are other BLAST parsing modules in the package, but they remain just to support older legacy code. Bio::SearchIO supports: BLAST MegaBLAST (PSL) PSIBLAST HMMER WABA BLASTZ (AXT) exonerate SIM4 Wise tools FASTA REPORTS As of version 1.1, BioPerl only supports one approach - the Bio::SearchIO interface. There are other BLAST parsing modules in the package, but they remain just to support older legacy code. Bio::SearchIO supports:

Answer»

As of VERSION 1.1, BIOPERL only supports one approach - the Bio::SearchIO interface. There are other BLAST parsing modules in the package, but they remain just to support older legacy code. Bio::SearchIO supports:

BLAST
MegaBLAST (PSL)
PSIBLAST
HMMER
WABA
BLASTZ (AXT)
exonerate
SIM4
Wise tools
FASTA REPORTS

As of version 1.1, BioPerl only supports one approach - the Bio::SearchIO interface. There are other BLAST parsing modules in the package, but they remain just to support older legacy code. Bio::SearchIO supports:

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I Want To Parse Blast, How Do I Do This?

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